Initial comit - Clone
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docker/Dockerfile
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docker/Dockerfile
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###############################################################################
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# STAGE 1: Build geneweb
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###############################################################################
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FROM ocaml/opam:debian-12-ocaml-4.14 AS builder
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ENV OPAMYES=yes
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# Install required packages for build
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USER root
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# Ignore the apt warning here as apt-get does not allow wildcarding versions
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# hadolint ignore=DL3027
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RUN export DEBIAN_FRONTEND=noninteractive \
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&& apt-get update -q \
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&& apt install -yq --no-install-recommends \
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libgmp-dev=2:6.* \
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libipc-system-simple-perl=1.* \
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libstring-shellquote-perl=1.* \
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perl=5.*
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# Set up geneweb package and dependencies
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USER opam
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RUN git clone https://github.com/geneweb/geneweb.git ./geneweb \
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&& opam init --disable-sandboxing && opam update
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WORKDIR /home/opam/geneweb
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RUN opam pin add geneweb.dev . --no-action && opam depext geneweb
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# Build geneweb
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RUN opam install geneweb --deps-only \
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&& eval "$(opam env)" \
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&& ocaml ./configure.ml --release && make clean distrib
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###############################################################################
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# STAGE 2: Export build via blank image
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###############################################################################
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FROM scratch AS export
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COPY --from=builder /home/opam/geneweb/distribution /
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###############################################################################
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# STAGE 3: Assemble Docker image
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###############################################################################
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FROM debian:12-slim AS container
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# Install runtime tools and add geneweb user
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# Ignore the apt warning here as apt-get does not allow wildcarding versions
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# hadolint ignore=DL3027
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RUN apt-get update -q \
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&& apt install -qy --no-install-recommends sudo openssl \
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&& apt-get clean \
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&& rm -rf /var/lib/apt/lists/* \
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&& adduser --system --group --uid 1000 --home /usr/local/share/geneweb --shell /bin/bash geneweb \
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&& usermod -aG sudo geneweb \
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&& echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
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# Add required directories and copy geneweb distribution
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USER geneweb
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WORKDIR /usr/local/share/geneweb
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RUN mkdir -p bin etc log share/data share/dist \
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&& echo "172.17.0.1" >> etc/gwsetup_only
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COPY --from=builder /home/opam/geneweb/distribution share/dist
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COPY geneweb-launch.sh bin/geneweb-launch.sh
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EXPOSE 2316-2317
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VOLUME [ "/usr/local/share/geneweb/share/data", "/usr/local/share/geneweb/etc" ]
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ENV GENEWEB_DATA_PATH=/usr/local/share/geneweb/share/data
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ENV GENEWEB_HOME=/usr/local/share/geneweb
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CMD [ "bin/geneweb-launch.sh" ]
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90
docker/geneweb-launch.sh
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docker/geneweb-launch.sh
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#!/bin/bash
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GENEWEB_HOME="/usr/local/share/geneweb"
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GENEWEB_DB=${GENEWEB_DB:=database}
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GENEWEB_DB_PATH=${GENEWEB_HOME}/share/data/${GENEWEB_DB}
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GENEWEB_ADMIN=${GENEWEB_ADMIN:=admin}
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GENEWEB_ADMIN_PASS=${GENEWEB_ADMIN_PASS:=$(openssl rand -hex 32)}
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GENEWEB_LANG=${GENEWEB_LANG:=en}
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gwlaunch_log() {
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echo "$(date +%Y-%m-%d_%H:%M:%S) geneweb-launch: $1"
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}
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set_db_config() {
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SETTING_NAME=${1,,}
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SETTING_VALUE=$2
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gwlaunch_log "-- Setting $SETTING_NAME to $SETTING_VALUE in database ${GENEWEB_DB}."
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if grep -q "^$SETTING_NAME=.*$" ${GENEWEB_DB_PATH}.gwf; then
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sed -i "s/^$SETTING_NAME=.*$/$SETTING_NAME=$SETTING_VALUE/" ${GENEWEB_DB_PATH}.gwf
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else
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echo "$SETTING_NAME=$SETTING_VALUE" >> ${GENEWEB_DB_PATH}.gwf
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fi
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}
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init() {
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# Create default database if it doesn't exist
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if [ ! -f ${GENEWEB_DB_PATH}.gwf ] || [ ! -d ${GENEWEB_DB_PATH}.gwb ]; then
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gwlaunch_log "Database ${GENEWEB_DB} not found, creating empty database..."
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cd ${GENEWEB_HOME}/share/data || exit 1
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${GENEWEB_HOME}/share/dist/gw/gwc -f -o ${GENEWEB_DB} > comm.log 2>&1
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cp ${GENEWEB_HOME}/share/dist/gw/a.gwf ${GENEWEB_DB_PATH}.gwf
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set_db_config "wizard_passwd_file" "wizard_passwd"
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echo "${GENEWEB_ADMIN}:${GENEWEB_ADMIN_PASS}" >> ${GENEWEB_HOME}/share/data/wizard_passwd
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gwlaunch_log "Configured access control."
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gwlaunch_log "-- ADMIN USERNAME: ${GENEWEB_ADMIN}"
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gwlaunch_log "-- ADMIN PASSWORD: ${GENEWEB_ADMIN_PASS}"
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else
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gwlaunch_log "Database ${GENEWEB_DB} exists."
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fi
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gwlaunch_log "Configuring settings for database ${GENEWEB_DB}"...
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for setting in $(env | grep GENEWEB_CONFIG_); do
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set_db_config "$(echo "${setting#GENEWEB_CONFIG_}" | cut -f1 -d=)" "$(echo "${setting#GENEWEB_CONFIG_}" | cut -f2 -d=)"
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done
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gwlaunch_log "Setting correct ownership of geneweb data."
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sudo chown -R geneweb:geneweb ${GENEWEB_HOME}/share/data
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sudo chown -R geneweb:geneweb ${GENEWEB_HOME}/etc
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sudo chown -R geneweb:geneweb ${GENEWEB_HOME}/log
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gwlaunch_log "-- Set ownership of geneweb data."
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}
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start() {
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cd ${GENEWEB_HOME}/share/data || exit 1
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gwlaunch_log "Starting gwsetup."
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${GENEWEB_HOME}/share/dist/gw/gwsetup \
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-daemon \
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-gd ${GENEWEB_HOME}/share/dist/gw \
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-only ${GENEWEB_HOME}/etc/gwsetup_only \
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>>${GENEWEB_HOME}/log/gwsetup.log 2>&1
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gwlaunch_log "-- Started gwsetup!"
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GWD_AUTH_FILE=${GWD_AUTH_FILE:=${GENEWEB_HOME}/etc/gwd_passwd}
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if [ -f $GWD_AUTH_FILE ]; then
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AUTH_ARG="-auth $GWD_AUTH_FILE"
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else
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AUTH_ARG=""
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fi
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gwlaunch_log "Starting gwd."
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${GENEWEB_HOME}/share/dist/gw/gwd \
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-daemon \
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-plugins -unsafe ${GENEWEB_HOME}/share/dist/gw/plugins \
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-trace_failed_passwd \
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-hd ${GENEWEB_HOME}/share/dist/gw \
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-log ${GENEWEB_HOME}/log/gwd.log \
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-bd ${GENEWEB_DATA_PATH} \
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$AUTH_ARG 2>&1
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gwlaunch_log "-- Started gwd!"
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gwlaunch_log "Launch complete! -------------------------------------------------------"
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tail -f ${GENEWEB_HOME}/log/gwsetup.log | sed "s/^/$(date +%Y-%m-%d_%H:%M:%S) gwsetup: /" & \
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tail -f ${GENEWEB_HOME}/log/gwd.log | sed "s/^/$(date +%Y-%m-%d_%H:%M:%S) gwd: /"
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}
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init
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start
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